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Annotation Services
These services are available for:
- Sanger data
- GS FLX data
- HiSeq2000 data
- Hybrid assembly data
EST / Transcriptome Annotation Database
This service has the following features:
- View trace (Sanger only data) and assembly sequence with quality information
- View and query BLAST similarity search results from up to five public or custom databases for all individual sequences and contigs
- View and query Interpro search results for all individual sequences and contigs
- Search Gene Ontologies categories for all individual sequences and contigs
- Add and search your own annotations made during curation
- Run BLAST searches against the sequences in the database
- Download sequence and similarity search data for clones of interest in Excel spreadsheets
Semi-automated Gene Annotation
This service has been run using partially and fully assembled genomes, viruses and cellular organelles generated by:
- Sanger only
- Sanger plus GS FLX data
- GS FLX data only
It contains the following features:
- Gene Finding
- Operon prediction
- BLAST similarity searches against up to five public databases
- Protein motif finding
- Subcellular localisation
