Bioinformatics
AGRF’s bioinformatics team turns complex data into insights. From genomics to other ‘omics’ and clinical datasets, we help unlock the story behind the numbers.
Covering a wide range of expertise in programming, statistics and biology, the team are capable of offering any commonly requested bioinformatics service, including Custom Analysis options and operates clinically accredited pipelines to ensure reliable, high-quality results you can trust.
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At AGRF, we help researchers uncover how genes behave differently under various conditions. Using advanced bioinformatics, we compare gene activity between samples, such as healthy versus diseased tissue, or treated versus untreated cells, to identify which genes are “switched on” or “switched off.” These insights provide a deeper understanding of biological processes and can guide research, diagnostics, and therapeutic development.
Short Read Sequencing: such as mRNA, Total RNA, small RNA
Long Read Sequencing
Proteomics
Methylation: such as PacBio, Arrays, Enzymatic MethylSeq
Single cell RNA
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AGRF helps researchers identify genetic differences, known as variants, across genomes. These can include changes as small as a single DNA letter or larger structural changes. By detecting and analysing these variants, we provide insights into traits, disease susceptibility, and individual responses to treatments, helping guide research, diagnostics, and personalised medicine.
Germline/hereditary SR - ISO15189 clinical accreditation
Somatic SR - TSO500 ISO15189, gene fusions
Somatic SR - WGS/WES ISO17025
ISO17025 Research uses, SNV, SV, CNV, Annotation, mitochondrial, HLA - SR and LGR
Pharmacogenomic
Polygenic Risk Score analysis
Non-human variant calling
Sanger Primer Designs
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At AGRF, we help researchers understand the genetic makeup of individuals and populations. Genomic characterisation involves mapping and analysing the DNA of organisms to reveal their unique genetic features. Population genomic structure examines how genetic variation is distributed across groups, populations, or species, providing insights into ancestry, diversity, and evolution. Together, these analyses support research in fields such as agriculture, conservation, health, and personalised medicine.
Large genome and transcriptome assembly
Plasmid/small genome assembly
Genome annotation
Transcript isoform assembly
CRISPR-Cas9 & transgenic changes
Advanced Genomic Services: such as Hi-C, Micro-C, Omni-C, CUT&RUN, ATAC-seq
Allegro
Population Genomics - Genotyping by Sequencing (GBS) -> SNP identification; reference-free genotyping
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At AGRF, we help researchers explore the communities of microorganisms that live in and around us. Microbiome bioinformatics involves analysing complex microbial data to understand which microbes are present, how they interact, and how they influence health, disease, or the environment. These insights can guide research in medicine, agriculture, ecology, and beyond, unlocking the hidden impact of microbes on our world.
Gene targeting for taxonomic annotation using 16S, ITS, CO1, or custom primers on request
Taxonomic and functional characterisation using MetaWGS
Metagenome contig assemblies through Long-Read
Functional screening
Differential abundance analysis
Overall community structure analysis (alpha/beta diversity)
Bioinformatics Quick Links
Differential Expression Analysis:
Short Read Sequencing: such as mRNA, Total RNA, small RNA
Long Read Sequencing
Proteomics
Methylation: such as PacBio, Arrays, Enzymatic MethylSeq
Single cell RNA
Variant Detection:
Germline/hereditary SR - ISO15189 clinical accreditation
Somatic SR - TSO500 ISO15189, gene fusions
Somatic SR - WGS/WES ISO17025
ISO17025 Research uses, SNV, SV, CNV, Annotation, mitochondrial, HLA - SR and LGR
Pharmacogenomic
Polygenic Risk Score analysis
Non-human variant calling
Sanger Primer Designs
Genomic Characterisation and Population Genomics/Structure
Large genome and transcriptome assembly
Plasmid/small genome assembly
Genome annotation
Transcript isoform assembly
CRISPR-Cas9 & transgenic changes
Advanced Genomic Services: such as Hi-C, Micro-C, Omni-C, CUT&RUN, ATAC-seq
Allegro
Population Genomics - Genotyping by Sequencing (GBS) -> SNP identification; reference-free genotyping
Microbiome Analysis
Gene targeting for taxonomic annotation using 16S, ITS, CO1, or custom primers on request
Taxonomic and functional characterisation using MetaWGS
Metagenome contig assemblies through Long-Read
Functional screening
Differential abundance analysis
Overall community structure analysis (alpha/beta diversity)
Download Bioinformatics Flyer, here.
AGRF is a proud partner of The Australian Research Council Industrial Transformation Research Hub (ARC ITRH) for Advanced Prawn Breeding, which is applying cutting-edge genetic and genomic selection methodologies in the most advanced and industry-transformative improvement program for any prawn/shrimp species globally.